There's nothing quite like waking up to the smell of breakfast pizza bagels baking in the oven. I remember the first time I made these for my kids on a busy school morning; their faces lit up when they saw pizza for breakfast! These breakfast pizza bagels combine everything you love about pizza with the heartiness of a morning meal, creating the perfect grab-and-go option that actually tastes amazing.
What makes breakfast pizza bagels so special is how customizable they are. Whether you're team bacon and eggs or prefer a veggie-loaded start to your day, these mini masterpieces deliver every single time. Plus, they're ready in under 20 minutes, making them perfect for those hectic weekday mornings when you need something more exciting than cold cereal.

Background & Why This Recipe Stands Out
Breakfast pizza bagels have become a staple in households across America, and for good reason. They first gained popularity in school cafeterias during the 1990s, quickly becoming a favorite among kids and adults alike. What started as a creative way to use leftover bagels has evolved into a beloved breakfast tradition that rivals any coffee shop offering.
This particular breakfast pizza bagels recipe stands out because it focuses on real ingredients and simple techniques that anyone can master. Unlike frozen varieties loaded with preservatives, these homemade versions let you control exactly what goes into your morning meal. The combination of toasted bagel, savory toppings, and melted cheese creates the perfect balance of textures; crispy edges, fluffy center, and that satisfying cheese pull that makes breakfast pizza bagels so irresistible. Whether you're feeding a crowd for Sunday brunch or meal prepping for the week ahead, this recipe delivers consistent, delicious results every time.
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Ingredients
For the Base
- Bagels (plain, everything, or whole wheat)
- Marinara sauce or pizza sauce
- Shredded mozzarella cheese
- Grated Parmesan cheese
For the Toppings
- Eggs, scrambled
- Strips bacon, cooked and crumbled
- Cooked breakfast sausage, crumbled
- Diced bell peppers
- Diced red onion
- Chopped fresh parsley
- Salt and black pepper to taste
Optional Add-ins
- Cherry tomatoes, halved
- Mushrooms, sliced
- Spinach leaves
- Jalapeños for heat
- Everything bagel seasoning

See recipe card for quantities.
Instructions
Step 1: Prepare Your Bagels and Preheat
- Preheat your oven to 375°F (190°C) and line a baking sheet with parchment paper.
- Slice each bagel in half horizontally to create two even rounds.
- Place bagel halves cut-side up on the prepared baking sheet.
- Lightly toast the bagel halves in the oven for 3-4 minutes; this prevents soggy breakfast pizza bagels.
Step 2: Cook Your Protein and Vegetables
- Heat a large skillet over medium heat and cook the bacon until crispy, about 5-6 minutes per side.
- Remove bacon and set aside, then cook the breakfast sausage in the same pan until browned, breaking it into small pieces.
- In a separate pan, scramble the eggs with a pinch of salt and pepper until just set but still slightly soft.
- Sauté the bell peppers and onions for 2-3 minutes until softened.
Step 3: Assemble Your Breakfast Pizza Bagels
- Spread about 1 tablespoon of marinara sauce on each toasted bagel half, leaving a small border around the edges.
- Sprinkle a generous layer of mozzarella cheese over the sauce.
- Add your scrambled eggs, distributing them evenly across all bagel halves.
- Top with crumbled bacon, sausage, and sautéed vegetables.
- Finish with another sprinkle of mozzarella and a light dusting of Parmesan cheese.
Step 4: Bake to Golden Perfection
- Place the assembled breakfast pizza bagels back in the oven and bake for 8-10 minutes.
- Watch for the cheese to become bubbly and golden around the edges.
- For extra crispy tops, broil for the last 1-2 minutes, keeping a close eye to prevent burning.
- Remove from oven and let cool for 2 minutes before serving; garnish with fresh parsley.
Expert Cooking Tips
Making the perfect breakfast pizza bagels requires a few insider tricks that take them from good to absolutely incredible.
- Toast Before Topping: Always pre-toast your bagel halves for 3-4 minutes before adding toppings. This crucial step creates a barrier that prevents the sauce from making your bagels soggy, ensuring you get that perfect crispy-chewy texture that makes breakfast pizza bagels so addictive.
- Don't Overload: While it's tempting to pile on all your favorite toppings, less is actually more. Too many toppings can make your bagels soggy and prevent even cooking. Stick to 2-3 main toppings plus cheese for the best results.
- Cook Eggs Separately: Pre-cooking your scrambled eggs ensures they're perfectly done and not rubbery. Cook them until they're about 80% done; they'll finish cooking in the oven and stay fluffy rather than becoming dry and overcooked.
- Layer Strategically: The order matters! Sauce goes directly on the toasted bagel, followed by half the cheese (which acts as a moisture barrier), then your toppings, then the remaining cheese on top. This layering technique ensures even melting and prevents ingredients from sliding off.
- Use Good Quality Cheese: Freshly shredded mozzarella melts better than pre-shredded varieties, which contain anti-caking agents. For the best cheese pull and flavor in your breakfast pizza bagels, shred your own cheese from a block.
- Watch the Broiler: If you're broiling for extra crispiness, never walk away from the oven. Bagels can go from perfectly golden to burnt in less than 60 seconds under the broiler.
Recipe Variations & Substitutions
The beauty of breakfast pizza bagels lies in their versatility, allowing you to customize them for any dietary need or taste preference.
- Vegetarian Version: Skip the bacon and sausage and load up on vegetables instead. Sautéed mushrooms, spinach, sun-dried tomatoes, and roasted red peppers create a delicious meat-free option that's just as satisfying.
- Vegan Breakfast Pizza Bagels: Use vegan bagels, dairy-free mozzarella shreds, and replace eggs with scrambled tofu seasoned with turmeric and black salt for an egg-like flavor. Add nutritional yeast for a cheesy taste.
- Low-Carb Option: Swap traditional bagels for low-carb alternatives or use portobello mushroom caps as your base. This dramatically reduces the carbs while still delivering on flavor.
- Gluten-Free: Use certified gluten-free bagels or English muffins. Many stores now carry excellent gluten-free options that toast beautifully for this recipe.
- Protein-Packed Version: Add an extra egg per bagel half, use turkey sausage instead of pork, and sprinkle with hemp seeds or chia seeds for an extra protein boost that keeps you full all morning.
- Spicy Kick: Add jalapeños, pepper jack cheese instead of mozzarella, and a drizzle of hot sauce before serving. Crushed red pepper flakes mixed into the sauce also add nice heat.
- Breakfast Pizza Bagels with Cream Cheese: Spread a thin layer of cream cheese under the marinara sauce for extra richness and tang; this creates an unexpectedly delicious flavor combination.
Equipment Recommendations
Having the right tools makes preparing breakfast pizza bagels easier and more enjoyable.
- Baking Sheet: A sturdy, rimmed baking sheet prevents any cheese or toppings from dripping into your oven.
- Parchment Paper: Makes cleanup effortless and prevents sticking.
- Sharp Serrated Knife: Essential for slicing bagels evenly without squashing them.
- Cast Iron Skillet: Perfect for cooking bacon and sausage with excellent heat distribution.
- Cheese Grater: For freshly shredded mozzarella that melts beautifully on your breakfast pizza bagels.
- Wire Cooling Rack: Allows air circulation if you want your bagels extra crispy on the bottom.
Storage & Meal Prep Tips
One of the best features of breakfast pizza bagels is how well they store and reheat, making them perfect for meal prep.
Refrigerator Storage: Store fully cooked and cooled breakfast pizza bagels in an airtight container with parchment paper between layers. They'll stay fresh in the refrigerator for up to 4 days.
Freezing Instructions: Flash freeze assembled but unbaked bagels on a baking sheet for 2 hours, then transfer to freezer bags. They'll keep for up to 3 months. Bake directly from frozen, adding 5-7 extra minutes to the cooking time.
Make-Ahead Assembly: You can assemble breakfast pizza bagels the night before, cover tightly with plastic wrap, and refrigerate. In the morning, simply pop them in the oven; add 2-3 minutes to the baking time if they're cold from the fridge.
Reheating Methods:
- Oven: 350°F for 8-10 minutes until heated through
- Air fryer: 350°F for 4-5 minutes for crispy results
- Microwave: 45-60 seconds (less crispy but quick)
Meal Prep Strategy: Cook all proteins and chop vegetables on Sunday, store separately, and assemble fresh throughout the week for the best texture in your breakfast pizza bagels.
The Secret That Changed Everything
Here's what I learned from my Italian grandmother that transformed my breakfast pizza bagels from ordinary to extraordinary: always brush the bagel edges with garlic butter before baking. This simple step creates a golden, flavorful crust that tastes like it came from a pizzeria. Mix 2 tablespoons melted butter with ½ teaspoon garlic powder and brush it around the exposed edges of each bagel half before adding your toppings.
The second game-changing secret is letting your breakfast pizza bagels rest for exactly 2 minutes after removing them from the oven. I know it's tempting to dive right in, but this brief cooling period allows the cheese to set slightly, preventing it from sliding off and making them much easier to eat. Plus, you won't burn your mouth on molten cheese; trust me, patience pays off here!
FAQ
What are the instructions for pizza bagels?
The basic instructions for breakfast pizza bagels involve slicing bagels in half, toasting them lightly, spreading sauce, adding toppings and cheese, then baking at 375°F for 8-10 minutes until the cheese melts and bubbles. Always pre-toast the bagels to prevent sogginess.
How long do I put pizza bagels in the microwave?
For breakfast pizza bagels in the microwave, heat for 45-60 seconds on high power. However, microwaving won't give you crispy edges; for best results, use an oven or air fryer instead. If microwaving, place on a microwave-safe plate and check at 45 seconds.
Can I meal prep breakfast bagels?
Yes! Breakfast pizza bagels are excellent for meal prep. Assemble them completely and freeze unbaked for up to 3 months, or cook fully and refrigerate for up to 4 days. You can also prep all components separately and assemble fresh each morning for optimal texture.
How long should pizza bagels be in the oven at 350 degrees?
At 350°F, breakfast pizza bagels will need 10-12 minutes to bake until the cheese is fully melted and bubbly. At the higher recommended temperature of 375°F, they only need 8-10 minutes. Lower temperatures require longer cooking times but can help prevent burnt edges.
Time to Get Cooking!
Now you have everything you need to create perfect breakfast pizza bagels that rival any restaurant version. These customizable morning treats bring together the best of both worlds: the beloved flavors of pizza with the satisfaction of a hearty breakfast. Whether you're making them for a special weekend brunch or prepping a week's worth for busy mornings, breakfast pizza bagels never disappoint.
The beauty of this recipe is its flexibility; experiment with different toppings, try various cheeses, and make it your own. Once you've mastered these breakfast pizza bagels, you'll never look at breakfast the same way again. They're proof that starting your day with pizza isn't just acceptable; it's absolutely delicious!
Looking for more creative breakfast ideas? Try our Tortilla Pizza Rolls Recipe for another fun twist on breakfast pizza, or check out our Sheet Pan Margherita Pizza Recipe for a classic dinner option that the whole family will love.
With love from my kitchen to yours,
Kaitlyn Reed
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Pairing
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Breakfast Pizza Bagels Recipe
Equipment
- Baking sheet Rimmed, to catch melted cheese
- Parchment paper Prevents sticking and eases cleanup
- Skillet For cooking bacon and sausage
- Spatula To scramble eggs
- Sharp knife For slicing bagels evenly
- Cheese grater For freshly shredded mozzarella
Ingredients
- 4 whole Bagels Plain, everything, or whole wheat
- 0.5 cup Marinara or pizza sauce Use your favorite brand
- 1.5 cups Shredded mozzarella cheese Freshly shredded preferred
- 0.25 cup Grated Parmesan cheese Optional, for extra flavor
- 4 large Eggs Scrambled
- 6 strips Bacon Cooked and crumbled
- 0.5 cup Breakfast sausage Cooked and crumbled
- 0.25 cup Diced bell peppers Any color
- 0.25 cup Diced red onion Adds sweetness and crunch
- 2 tablespoon Chopped parsley For garnish
- 1 pinch Salt and black pepper To taste
- optional Everything bagel seasoning Adds flavor and crunch
- optional Jalapeños or spinach For variation
Instructions
- Preheat oven to 375°F (190°C) and line a baking sheet with parchment paper.
- Slice bagels in half, place on sheet cut-side up, and toast for 3–4 minutes.
- Cook bacon and sausage until crispy; scramble eggs separately.
- Spread marinara sauce on toasted bagels, add cheese, eggs, and toppings.
- Sprinkle with remaining cheese and Parmesan.
- Bake for 8–10 minutes until cheese is bubbly and golden.
- Let cool for 2 minutes, garnish with parsley, and serve warm.













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